Manual upload of raw data

For on-premise installations you can set up automatic import of raw data from the instruments. But you can also just upload files manually in Peaksel. For this you simply open New Injections page and drag’n’drop your zip with raw data.

Depending on the vendor, the archive should contain:

  • Raw directories (most vendors)

  • Raw files, e.g. Shimadzu LCD

  • For mzML there should be a directory or multiple directories with mzml extension, like this: 001.mzml. Inside the directory there should be one or more files for each detector with *.MzML extension.

  • See the full list of supported formats

You can group the files in sub-directories. Some formats (like Agilent ChemStation) don’t have an easy way for Peaksel to recognize if they came from the same plate or not - grouping in sub-directories may help.

By default, in on-prem installations ZIP can’t be greater than 1GB in size. This can be changed in the Global Properties.